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    Academic Journals

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• Select Predicting nuclear gene coalescence from mitochondrial data: the three-times rule

  1

  Predicting nuclear gene coalescence from mitochondrial data: the three-times rule

  Authors:Stephen R. Palumbi, Frank Cipriano, and Matthew P. HareFrom:Evolution (Vol. 55, Issue 5) Peer-Reviewed

  May 200181 words Article

   Citation Only
• Select Confirmation of a unique and genetically diverse 'heritage' strain of brook trout (Salvelinus fontinalis) in a remote Adirondack watershed

  2

  Confirmation of a unique and genetically diverse 'heritage' strain of brook trout (Salvelinus fontinalis) in a remote Adirondack watershed

  Authors:Spencer A. Bruce, Matthew P. Hare, Matthew W. Mitchell, and Jeremy J. WrightFrom:Conservation Genetics (Vol. 19, Issue 1) Peer-Reviewed

  Feb. 2018363 words Report

   Abstract Only
• Select Hybridization between previously isolated ancestors may explain the persistence of exactly two ancient lineages in the genome of the oyster parasite Perkinsus marinus

  3

  Hybridization between previously isolated ancestors may explain the persistence of exactly two ancient lineages in the genome of the oyster parasite Perkinsus marinus

  Authors:Peter C. Thompson, Benjamin M. Rosenthal, and Matthew P. HareFrom:Infection, Genetics and Evolution (Vol. 24) Peer-Reviewed

  June 201439 words Article

   Abstract Only
• Select Isolation by distance in the eastern oyster, Crassostrea virginica, in Chesapeake Bay

  4

  Isolation by distance in the eastern oyster, Crassostrea virginica, in Chesapeake Bay

  Authors:Colin G. Rose, Kennedy T. Paynter, and Matthew P. HareFrom:The Journal of Heredity (Vol. 97, Issue 2) Peer-Reviewed

  March-April 200638 words Article

   Citation Only
• Select Differential fertilization success between two populations of eastern oyster, Crassostrea virginica

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  Differential fertilization success between two populations of eastern oyster, Crassostrea virginica

  Authors:Haibin Zhang, John Scarpa, and Matthew P. HareFrom:The Biological Bulletin (Vol. 219, Issue 2) Peer-Reviewed

  Oct. 20105,669 words Report 1530LIdentification of mechanisms promoting prezygotic reproductive isolation and their prevalence are key goals in evolutionary biology because of their potential role in speciation. In marine broadcast-spawning species,...
• Select Crossing the chasm: a 'tube-map' for agent-based social simulation of policy scenarios in spatially-distributed systems

  6

  Crossing the chasm: a 'tube-map' for agent-based social simulation of policy scenarios in spatially-distributed systems

  Authors:J. Gareth Polhill, Jiaqi Ge, Matthew P. Hare, Keith B. Matthews, Alessandro Gimona, Douglas Salt, et al.From:GeoInformatica (Vol. 23, Issue 2) Peer-Reviewed

  Apr. 201914,038 words Article 1530LAgent based models (ABMs) simulate actions and interactions of autonomous agents/groups and their effect on systems as a whole, accounting for learning without assuming perfect rationality or complete knowledge. ABMs...
• Select An evolutionary legacy of sex and clonal reproduction in the protistan oyster parasite Perkinsus marinus

  7

  An evolutionary legacy of sex and clonal reproduction in the protistan oyster parasite Perkinsus marinus

  Authors:Peter C. Thompson, Benjamin M. Rosenthal, and Matthew P. HareFrom:Infection, Genetics and Evolution (Vol. 11, Issue 3) Peer-Reviewed

  Apr. 2011 Report

   Citation Only
• Select A genomic scan for divergent selection in a secondary contact zone between Atlantic and Gulf of Mexico oysters, Crassostrea virginica

  8

  A genomic scan for divergent selection in a secondary contact zone between Atlantic and Gulf of Mexico oysters, Crassostrea virginica

  Authors:Maria C. Murray and Matthew P. HareFrom:Molecular Ecology (Vol. 15, Issue 13) Peer-Reviewed

  Nov. 2006304 words Author abstract 60L

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• Select Troubled waters: Risk perception and the case of oyster restoration in the closed waters of the Hudson-Raritan Estuary

  9

  Troubled waters: Risk perception and the case of oyster restoration in the closed waters of the Hudson-Raritan Estuary

  Authors:Jason R. Holley, Katherine A. McComas, and Matthew P. HareFrom:Marine Policy (Vol. 91) Peer-Reviewed

  May 2018245 words Report

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• Select Genetic relationships of the marine invasive crab parasite Loxothylacus panopaei: an analysis of DNA sequence variation, host specificity, and distributional range

  10

  Genetic relationships of the marine invasive crab parasite Loxothylacus panopaei: an analysis of DNA sequence variation, host specificity, and distributional range

  Authors:Inken Kruse, Matthew P. Hare, and Anson H. HinesFrom:Biological Invasions (Vol. 14, Issue 3) Peer-Reviewed

  Mar. 2012 Report

   Citation Only
• Select Reef-specific patterns of gene expression plasticity in eastern oysters (crassostrea virginica)

  11

  Reef-specific patterns of gene expression plasticity in eastern oysters (crassostrea virginica)

  Authors:Laura E. Eierman and Matthew P. HareFrom:The Journal of Heredity (Vol. 107, Issue 1) Peer-Reviewed

  January-February 2016 Report

   Citation Only
• Select Transcriptomic analysis of candidate osmoregulatory genes in the eastern oyster Crassostrea virginica

  12

  Transcriptomic analysis of candidate osmoregulatory genes in the eastern oyster Crassostrea virginica

  Authors:Laura E Eierman and Matthew P HareFrom:BMC Genomics (Vol. 15, Issue 1) Peer-Reviewed

  June 20, 20149,006 words Article 1480LBackground The eastern oyster, Crassostrea virginica, is a euryhaline species that can thrive across a wide range of salinities (5-35). As with all estuarine species, individual oysters must be able to regulate their...
• Select Examining the occupancy-density relationship for a low-density carnivore

  13

  Examining the occupancy-density relationship for a low-density carnivore

  Authors:Daniel W. Linden, Angela K. Fuller, J. Andrew Royle, Matthew P. Hare, and Jacqueline FrairFrom:Journal of Applied Ecology (Vol. 54, Issue 6) Peer-Reviewed

  Dec. 2017503 words Report

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• Select Comparison of genetic and visual identification of cisco and lake whitefish larvae from Chaumont Bay, Lake Ontario

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  Comparison of genetic and visual identification of cisco and lake whitefish larvae from Chaumont Bay, Lake Ontario

  Authors:Ellen M. George, Matthew P. Hare, Darran L. Crabtree, Brian F. Lantry, and Lars G. RudstamFrom:Canadian Journal of Fisheries and Aquatic Sciences (Vol. 75, Issue 8) Peer-Reviewed

  Aug. 20185,969 words Report 1420LCisco (Coregonus artedi) are an important component of native food webs in the Great Lakes, and their restoration is instrumental to the recovery of lake trout (Salvelinus namaycush) and Atlantic salmon (Salmo salar)....
• Select The Emergence of an Endangered Species: Evolution and Phylogeny of the Trachypithecus geei of Bhutan

  15

  The Emergence of an Endangered Species: Evolution and Phylogeny of the Trachypithecus geei of Bhutan

  Authors:Tashi Wangchuk, David W. Inouye, and Matthew P. HareFrom:International Journal of Primatology (Vol. 29, Issue 3) Peer-Reviewed

  June 2008481 words Report

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• Select A genetic test for recruitment enhancement in Chesapeake Bay oysters, Crassostrea virginica, after population supplementation with a disease tolerant strain

  16

  A genetic test for recruitment enhancement in Chesapeake Bay oysters, Crassostrea virginica, after population supplementation with a disease tolerant strain

  Authors:Matthew P. Hare, Standish K. Allen, Paulette Bloomer, Mark D. Camara, Ryan B. Carnegie, Jenna Murfree, et al.From:Conservation Genetics (Vol. 7, Issue 5) Peer-Reviewed

  Oct. 2006429 words Author abstract 60L

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• Select Correction: Restoring oysters to urban estuaries: Redefining habitat quality for eastern oyster performance near New York City.

  17

  Correction: Restoring oysters to urban estuaries: Redefining habitat quality for eastern oyster performance near New York City.

  Authors:Katherine McFarland and Matthew P. HareFrom:PLoS ONE (Vol. 14, Issue 6) Peer-Reviewed

  June 13, 2019101 words Correction notice, B... 800LAuthor(s): Katherine McFarland, Matthew P. Hare The following information is missing from the Funding statement: This study was also supported by the New York Sea Grant project R/XG-22. Reference 1. McFarland K,...
• Select Restoring oysters to urban estuaries: Redefining habitat quality for eastern oyster performance near New York City

  18

  Restoring oysters to urban estuaries: Redefining habitat quality for eastern oyster performance near New York City

  Authors:Katherine McFarland and Matthew P. HareFrom:PLoS ONE (Vol. 13, Issue 11) Peer-Reviewed

  Nov. 16, 201813,418 words Report 1590LRestoring and conserving coastal resilience faces increasing challenges under current climate change predictions. Oyster restoration, in particular, faces threats from alterations in precipitation, warming water...
• Select Mitochondrial-DNA variation in the polytypic Alaskan Song Sparrow

  19

  Mitochondrial-DNA variation in the polytypic Alaskan Song Sparrow

  Authors:Matthew P. Hare and Gerald F. ShieldsFrom:The Auk (Vol. 109, Issue 1) Peer-Reviewed

  Jan. 199273 words Article

   Abstract Only
• Select Evaluating recruitment contribution of a selectively bred aquaculture line of the oyster, Crassostrea virginica used in restoration efforts

  20

  Evaluating recruitment contribution of a selectively bred aquaculture line of the oyster, Crassostrea virginica used in restoration efforts

  Authors:Jens Carlsson, Ryan B. Carnegie, Jan F. Cordes, Matthew P. Hare, A. Thomas Leggett, and Kimberly S. ReeceFrom:Journal of Shellfish Research (Vol. 27, Issue 5) Peer-Reviewed

  Dec. 20087,140 words Abstract 1560LABSTRACT Severe over-fishing, habitat degradation, and recent disease impacts have devastated the eastern oyster (Crassostrea virginica) fishery in the Chesapeake Bay. Several restoration efforts are in progress,...