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    Academic Journals

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• Antimicrobial Resistance in the Environment

  Author:Heather K. AllenFrom:Quarterly Review of Biology (Vol. 87, Issue 4) Peer-Reviewed

  Dec. 2012 Book review

   Citation Only

• Fecal microbiota changes associated with dehorning and castration stress primarily affects light-weight dairy calves

  Authors:Raies A. Mir, Michael D. Kleinhenz, Johann F. Coetzee, Heather K. Allen, and Indira T. KudvaFrom:PLoS ONE (Vol. 14, Issue 1) Peer-Reviewed

  Jan. 23, 20196,376 words Report 1560LGastrointestinal tract (GIT) microbiota and stress can impact animal health. Studies have shown that perturbations in the GIT microbiota can influence host health and productivity by affecting physiological homeostasis,...

• Function and phylogeny of bacterial butyryl coenzyme A: Acetate transferases and their diversity in the proximal colon of swine

  Authors:Julian Trachsel, Darrell O. Bayles, Torey Looft, Uri Y. Levine, and Heather K. AllenFrom:Applied and Environmental Microbiology (Vol. 82, Issue 22) Peer-Reviewed

  Nov. 15, 201679 words Report

   Abstract Only

• In-feed antibiotic effects on the swine intestinal microbiome.

  Authors:Torey Looft, Timothy A. Johnson, Heather K. Allen, Darrell O. Bayles, David P. Alt, Robert D. Stedtfeld, et al.From:Proceedings of the National Academy of Sciences of the United States (Vol. 109, Issue 5) Peer-Reviewed

  Jan. 31, 2012248 words Report, Author abstr...

   Abstract Only

• Butyrate-producing bacteria, including mucin degraders, from the swine intestinal tract

  Authors:Uri Y. Levine, Torey Looft, Heather K. Allen, and Thad B. StantonFrom:Applied and Environmental Microbiology (Vol. 79, Issue 12) Peer-Reviewed

  June 15, 2013 Report

   Citation Only

• Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor

  Authors:Lynn L. Williamson, Jo Handelsman, Bradley R. Borlee, Patrick D. Schloss, Changhui Guan, and Heather K. AllenFrom:Applied and Environmental Microbiology (Vol. 71, Issue 10) Peer-Reviewed

  Oct. 200543 words Article

   Abstract Only

• Outer membrane protein A (OmpA) of extraintestinal pathogenic Escherichia coli

  Authors:Daniel W. Nielsen, Nicole Ricker, Nicolle L. Barbieri, Heather K. Allen, Lisa K. Nolan, and Catherine M. LogueFrom:BMC Research Notes (Vol. 13, Issue 1) Peer-Reviewed

  Jan. 31, 20203,081 words Report 1390LObjective Extraintestinal Pathogenic E. coli (ExPEC), are responsible for host diseases such as Neonatal Meningitis Escherichia coli (NMEC), the second-leading cause of neonatal bacterial meningitis, Avian Pathogenic...

• Pipeline for amplifying and analyzing amplicons of the V1-V3 region of the 16S rRNA gene

  Authors:Heather K. Allen, Darrell O. Bayles, Torey Looft, Julian Trachsel, Benjamin E. Bass, David P. Alt, et al.From:BMC Research Notes (Vol. 9, Issue 1) Peer-Reviewed

  Aug. 2, 20163,369 words Report 1560LBackground Profiling of 16S rRNA gene sequences is an important tool for testing hypotheses in complex microbial communities, and analysis methods must be updated and validated as sequencing technologies advance. In...

• A Response Regulator from a Soil Metagenome Enhances Resistance to the [beta]-Lactam Antibiotic Carbenicillin in Escherichia coli

  Authors:Heather K. Allen, Ran An, Jo Handelsman, and Luke A. MoeFrom:PLoS ONE (Vol. 10, Issue 3) Peer-Reviewed

  Mar. 17, 20155,607 words Article 1590LFunctional metagenomic analysis of soil metagenomes is a method for uncovering as-yet unidentified mechanisms for antibiotic resistance. Here we report an unconventional mode by which a response regulator derived from a...

• Investigating the dispersal of antibiotic resistance associated genes from manure application to soil and drainage waters in simulated agricultural farmland systems

  Authors:Schuyler D. Smith, Phillip Colgan, Fan Yang, Elizabeth L. Rieke, Michelle L. Soupir, Thomas B. Moorman, et al.From:PLoS ONE (Vol. 14, Issue 9) Peer-Reviewed

  Sept. 17, 20195,667 words Report 1520LManure from animals that have been treated with antibiotics is often used to fertilize agricultural soils and its application has previously been shown to enrich for genes associated with antibiotic resistance in...