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    Academic Journals

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• Altered patterns of fractionation and exon deletions in brassica rapa support a two-step model of paleohexaploidy

  Authors:Haibao Tang, Margaret R. Woodhouse, Feng Cheng, James C. Schnable, Brent S. Pedersen, Gavin Conant, et al.From:Genetics (Vol. 190, Issue 4) Peer-Reviewed

  Apr. 2012 Author abstract, Rep...

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• High-resolution mapping of open chromatin in the rice genome

  Authors:Wenli Zhang, Yufeng Wu, James C. Schnable, Zixian Zeng, Michael Freeling, Gregory E. Crawford, et al.From:Genome Research (Vol. 22, Issue 1) Peer-Reviewed

  Jan. 2012 Report

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• Nonsyntenic genes drive highly dynamic complementation of gene expression in maize hybrids

  Authors:Anja Paschold, Nick B. Larson, Caroline Maroon, James C. Schnable, Cheng-Ting Yeh, Christa Lanz, et al.From:The Plant Cell (Vol. 26, Issue 10) Peer-Reviewed

  Oct. 20147,594 words Report 1520L

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• Phylogeny and photosynthesis of the grass tribe Paniceae

  Authors:Jacob D. Washburn, James C. Schnable, Gerrit Davidse, and J. Chris PiresFrom:The American Journal of Botany (Vol. 102, Issue 9) Peer-Reviewed

  Sept. 2015250 words Author abstract

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• Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets

  Authors:Naser AlKhalifah, Darwin A. Campbell, Celeste M. Falcon, Jack M. Gardiner, Nathan D. Miller, Maria Cinta Romay, et al.From:BMC Research Notes (Vol. 11, Issue 1) Peer-Reviewed

  July 9, 20182,317 words Report 1550LObjectives Crop improvement relies on analysis of phenotypic, genotypic, and environmental data. Given large, well-integrated, multi-year datasets, diverse queries can be made: Which lines perform best in hot, dry...

• Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss

  Authors:James C. Schnable, Nathan M. Springer, and Michael FreelingFrom:Proceedings of the National Academy of Sciences of the United States (Vol. 108, Issue 10) Peer-Reviewed

  Mar. 8, 2011194 words Author abstract, Rep...

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• Maize genomes to fields (G2F): 2014-2017 field seasons: genotype, phenotype, climatic, soil, and inbred ear image datasets

  Authors:Bridget A. McFarland, Naser AlKhalifah, Martin Bohn, Jessica Bubert, Edward S. Buckler, Ignacio Ciampitti, et al.From:BMC Research Notes (Vol. 13, Issue 1) Peer-Reviewed

  Feb. 12, 20201,970 words Report 1640LObjectives Advanced tools and resources are needed to efficiently and sustainably produce food for an increasing world population in the context of variable environmental conditions. The maize genomes to fields (G2F)...

• Differentially Regulated Orthologs in Sorghum and the Subgenomes of Maize

  Authors:Yang Zhang, Daniel W. Ngu, Daniel Carvalho, Zhikai Liang, Yumou Qiu, Rebecca L. Roston, et al.From:The Plant Cell (Vol. 29, Issue 8) Peer-Reviewed

  Aug. 201710,741 words Article 1580L

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• RNA-seq based analysis of population structure within the maize inbred B73

  Authors:Zhikai Liang and James C. SchnableFrom:PLoS ONE (Vol. 11, Issue 6) Peer-Reviewed

  June 27, 20166,191 words Report 1590LRecent reports have shown than many identically named genetic lines used in research around the world actually contain large amounts of uncharacterized genetic variation as a result of cross contamination of stocks,...

• Microsatellite Variations of Elite Setaria Varieties Released during Last Six Decades in China

  Authors:Guanqing Jia, Xiaotong Liu, James C. Schnable, Zhengang Niu, Chunfang Wang, Yuhui Li, et al.From:PLoS ONE (Vol. 10, Issue 5) Peer-Reviewed

  May 1, 20156,709 words Article 1840LCrop improvement is a multifaceted micro-evolutionary process, involving changes in breeding approaches, planting configurations and consumption preferences of human beings. Recent research has started to identify the...

• Genes Identified by Visible Mutant Phenotypes Show Increased Bias toward One of Two Subgenomes of Maize

  Authors:James C. Schnable and Michael FreelingFrom:PLoS ONE (Vol. 6, Issue 3) Peer-Reviewed

  Mar. 10, 20114,697 words Article 1620LNot all genes are created equal. Despite being supported by sequence conservation and expression data, knockout homozygotes of many genes show no visible effects, at least under laboratory conditions. We have identified...

• Increased Power and Accuracy of Causal Locus Identification in Time Series Genome-wide Association in Sorghum

  Authors:Chenyong Miao, Yuhang Xu, Sanzhen Liu, Patrick S. Schnable, and James C. SchnableFrom:Plant Physiology (Vol. 183, Issue 4) Peer-Reviewed

  Aug. 202010,520 words Report 1450L

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• Shared Genetic Control of Root System Architecture between Zea mays and Sorghum bicolor

  Authors:Zihao Zheng, Stefan Hey, Talukder Jubery, Huyu Liu, Yu Yang, Lisa Coffey, et al.From:Plant Physiology (Vol. 182, Issue 2) Peer-Reviewed

  Feb. 202012,015 words Report 1390L

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• 72-h diurnal RNA-seq analysis of fully expanded third leaves from maize, sorghum, and foxtail millet at 3-h resolution.

  Authors:Xianjun Lai, Claire Bendix, Yang Zhang, James C. Schnable, and Frank G. HarmonFrom:BMC Research Notes (Vol. 14, Issue 1) Peer-Reviewed

  Jan. 14, 2021871 words Report 1640LObjectives The purpose of this data set is to capture the complete diurnal (i.e., daily) transcriptome of fully expanded third leaves from the C4 panacoid grasses sorghum (Sorghum bicolor), maize (Zea mays), and...

• A co-opted steroid synthesis gene, maintained in sorghum but not maize, is associated with a divergence in leaf wax chemistry.

  Authors:Lucas Busta, Elizabeth Schmitz, Dylan K. Kosma, James C. Schnable, and Edgar B. CahoonFrom:Proceedings of the National Academy of Sciences of the United States (Vol. 118, Issue 12) Peer-Reviewed

  Mar. 23, 202112,017 words Report 1480L

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