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    Academic Journals

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• Identifying transcript 5'capped ends in Plasmodium falciparum.

  Authors:Philip J. Shaw, Jittima Piriyapongsa, Pavita Kaewprommal, Chayaphat Wongsombat, Chadapohn Chaosrikul, Krirkwit Teeravajanadet, et al.From:PeerJ (Vol. 9) Peer-Reviewed

  Aug. 25, 202115,372 words Article 1510LBackground The genome of the human malaria parasite Plasmodium falciparum is poorly annotated, in particular, the 5'capped ends of its mRNA transcripts. New approaches are needed to fully catalog P. falciparum...

• ToNER: A tool for identifying nucleotide enrichment signals in feature-enriched RNA-seq data

  Authors:Yuttachon Promworn, Pavita Kaewprommal, Philip J. Shaw, Apichart Intarapanich, Sissades Tongsima, and Jittima PiriyapongsaFrom:PLoS ONE (Vol. 12, Issue 5) Peer-Reviewed

  May 25, 20178,143 words Report 1510LBackground Biochemical methods are available for enriching 5' ends of RNAs in prokaryotes, which are employed in the differential RNA-seq (dRNA-seq) and the more recent Cappable-seq protocols. Computational methods...

• Stepwise acquisition of pyrimethamine resistance in the malaria parasite

  Authors:Elena R. Lozovsky, Thanat Chookajorn, Kyle M. Brown, Mallika Imwong, Philip J. Shaw, Sumalee Kamchonwongpaisan, et al.From:Proceedings of the National Academy of Sciences of the United States (Vol. 106, Issue 29) Peer-Reviewed

  July 21, 2009220 words Author abstract, Rep...

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• The Plasmodium berghei RC strain is highly diverged and harbors putatively novel drug resistance variants

  Authors:Warangkhana Songsungthong, Supasak Kulawonganunchai, Alisa Wilantho, Sissades Tongsima, Pongpisid Koonyosying, Chairat Uthaipibull, et al.From:PeerJ (Vol. 5) Peer-Reviewed

  Oct. 5, 20178,171 words Report 1420LBackground The current first line drugs for treating uncomplicated malaria are artemisinin (ART) combination therapies. However, Plasmodium falciparum parasites resistant to ART and partner drugs are spreading, which...

• PanSNPdb: The Pan-Asian SNP Genotyping Database

  Authors:Chumpol Ngamphiw, Anunchai Assawamakin, Shuhua Xu, Philip J. Shaw, Jin Ok Yang, Ho Ghang, et al.From:PLoS ONE (Vol. 6, Issue 6) Peer-Reviewed

  June 23, 20112,887 words Article 1580LThe HUGO Pan-Asian SNP consortium conducted the largest survey to date of human genetic diversity among Asians by sampling 1,719 unrelated individuals among 71 populations from China, India, Indonesia, Japan, Malaysia,...

• PTEX is an essential nexus for protein export in malaria parasites

  Authors:Brendan Elsworth, Kathryn Matthews, Catherine Q. Nie, Ming Kalanon, Sarah C. Charnaud, Paul R. Sanders, et al.From:Nature (Vol. 511, Issue 7511) Peer-Reviewed

  July 31, 20146,478 words Author abstract, Rep... 1450LDuring the blood stages of malaria, several hundred parasite-encoded proteins are exported beyond the double-membrane barrier that separates the parasite from the host cell cytosol (1-6). These proteins have a variety...

• Genetic analysis of Thai cattle reveals a Southeast Asian indicine ancestry

  Authors:Pongsakorn Wangkumhang, Alisa Wilantho, Philip J. Shaw, Laurence Flori, Katayoun Moazami-Goudarzi, Mathieu Gautier, et al.From:PeerJ (Vol. 3) Peer-Reviewed

  Oct. 27, 20155,597 words Article 1290LCattle commonly raised in Thailand have characteristics of Bos indicus (zebu). We do not know when or how cattle domestication in Thailand occurred, and so questions remain regarding their origins and relationships to...

• Uncovering full-length transcript isoforms of sugarcane cultivar Khon Kaen 3 using single-molecule long-read sequencing

  Authors:Jittima Piriyapongsa, Pavita Kaewprommal, Sirintra Vaiwsri, Songtham Anuntakarun, Warodom Wirojsirasak, Prapat Punpee, et al.From:PeerJ (Vol. 6) Peer-Reviewed

  Oct. 30, 20188,458 words Report 1610LBackground Sugarcane is an important global food crop and energy resource. To facilitate the sugarcane improvement program, genome and gene information are important for studying traits at the molecular level. Most...