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    Academic Journals

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• Select Next-generation sequencing for lung cancer

  1

  Next-generation sequencing for lung cancer

  Authors:Kehua Wu, R. Stephanie Huang, Larry House, and William Chi ChoFrom:Future Oncology (Vol. 9, Issue 9) Peer-Reviewed

  Sept. 20138,571 words Report 1340LAuthor(s): Kehua Wu 1 , R Stephanie Huang 1 , Larry House 1 , William Chi Cho [*] 2 Keywords : * lung cancer; next-generation sequencing; whole-exome sequencing; whole-genome sequencing; whole-transcriptome...
• Select Characteristics of invasive aspergillosis in neutropenic haematology patients (Sousse, Tunisia)

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  Characteristics of invasive aspergillosis in neutropenic haematology patients (Sousse, Tunisia)

  Authors:Soukeina Gheith, Fatma Saghrouni, Wadiaa Bannour, Yosra Ben Youssef, Abderrahim Khelif, Anne-Cecile Normand, et al.From:Mycopathologia (Vol. 177, Issue 5-6) Peer-Reviewed

  June 20144,661 words Article 1410LAlthough scarce, available data suggest that the epidemiology of invasive aspergillosis (IA) in North Africa differs from northern countries, where more than 80 % is caused by Aspergillus fumigatus. This study aimed at...
• Select Detecting authorized and unauthorized genetically modified organisms containing vip3A by real-time PCR and next-generation sequencing

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  Detecting authorized and unauthorized genetically modified organisms containing vip3A by real-time PCR and next-generation sequencing

  Authors:Chanjuan Liang, Jeroen P. van Dijk, Ingrid M.J. Scholtens, Martijn Staats, Theo W. Prins, Marleen M. Voorhuijzen, et al.From:Analytical and Bioanalytical Chemistry (Vol. 406, Issue 11) Peer-Reviewed

  Apr. 15, 20145,986 words Article 1440LThe growing number of biotech crops with novel genetic elements increasingly complicates the detection of genetically modified organisms (GMOs) in food and feed samples using conventional screening methods. Unauthorized...
• Select Novel NAT2 haplotyping using allele-specific sequencing

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  Novel NAT2 haplotyping using allele-specific sequencing

  Authors:Seong-Ho Kang, Geon Park, Sook Jin Jang, and Dae-Soo MoonFrom:Pharmacogenomics (Vol. 15, Issue 8) Peer-Reviewed

  June 20143,489 words Report 1390LAuthor(s): Seong-Ho Kang aff1 , Geon Park [*] aff1 , Sook Jin Jang aff1 aff2 , Dae-Soo Moon aff1 Keywords: allele-specific sequencing; haplotyping; NAT2 Background NAT2 activates and deactivates nitrogenous...
• Select The genome and transcriptome of a single cell

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  The genome and transcriptome of a single cell

  From:Nature Methods (Vol. 12, Issue 3) Peer-Reviewed

  Mar. 2015147 words Brief article 1430LSingle-cell sequencing enables the study of tissue heterogeneity and rare cells, but it has been impossible to directly connect genotype with gene expression from such data. Dey et al. now describe genomic DNA-mRNA...
• Select Functions of noncoding sequences in mammalian genomes

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  Functions of noncoding sequences in mammalian genomes

  Authors:L.I. Patrushev and T.F. KovalenkoFrom:Biochemistry (Moscow) (Vol. 79, Issue 13) Peer-Reviewed

  Dec. 15, 201423,762 words Report 1430LMost of the mammalian genome consists of nucleotide sequences not coding for proteins. Exons of genes make up only 3% of the human genome, while the significance of most other sequences remains unknown. Recent genome...
• Select Investigators from Manchester Royal Infirmary Zero in on Tuberculosis and Genetics (Rapid Whole-Genome Sequencing of Mycobacterium tuberculosis Isolates Directly from Clinical Samples)

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  Investigators from Manchester Royal Infirmary Zero in on Tuberculosis and Genetics (Rapid Whole-Genome Sequencing of Mycobacterium tuberculosis Isolates Directly from Clinical Samples)

  From:Obesity, Fitness & Wellness Week

  Aug. 22, 2015450 words Report 1540L2015 AUG 22 (NewsRx) -- By a News Reporter-Staff News Editor at Obesity, Fitness & Wellness Week -- New research on Mycobacterium Infections is the subject of a report. According to news reporting originating from...
• Select Reconstructible phylogenetic networks: do not distinguish the indistinguishable

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  Reconstructible phylogenetic networks: do not distinguish the indistinguishable

  Authors:Fabio Pardi and Celine ScornavaccaFrom:PLoS Computational Biology (Vol. 11, Issue 4) Peer-Reviewed

  Apr. 201510,598 words Report 1520LPhylogenetic networks represent the evolution of organisms that have undergone reticulate events, such as recombination, hybrid speciation or lateral gene transfer. An important way to interpret a phylogenetic network...
• Select The Pif1 helicase, a negative regulator of telomerase, acts preferentially at long telomeres

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  The Pif1 helicase, a negative regulator of telomerase, acts preferentially at long telomeres

  Authors:Jane A. Phillips, Angela Chan, Katrin Paeschke, and Virginia A. ZakianFrom:PLoS Genetics (Vol. 11, Issue 4) Peer-Reviewed

  Apr. 20157,924 words Report 1430LTelomerase, the enzyme that maintains telomeres, preferentially lengthens short telomeres. The S. cerevisiae Pif1 DNA helicase inhibits both telomerase-mediated telomere lengthening and de novo telomere addition at...
• Select Microbial diversity in the gut may protect against allergies

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  Microbial diversity in the gut may protect against allergies

  Author:Lisa ShermanFrom:The Journal of Chinese Medicine (Issue 98)

  Feb. 2012186 words Brief article 1340LHaving a high diversity of bacterial species in the gut may protect babies against developing allergies, according to a comprehensive study of intestinal microflora in allergic and healthy infants conducted in Sweden....
• Select Differential infectivity by the oral route of Trypanosoma cruzi lineages derived from y strain

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  Differential infectivity by the oral route of Trypanosoma cruzi lineages derived from y strain

  Authors:Cristian Cortez, Rafael M. Martins, Renan M. Alves, Richard C. Silva, Luciana C. Bilches, Silene Macedo, et al.From:PLoS Neglected Tropical Diseases (Vol. 6, Issue 10) Peer-Reviewed

  Oct. 20128,062 words Report 1580LBackground: Diversity of T. cruzi strains is a central problem in Chagas disease research because of its correlation with the wide range of clinical manifestations and the biogeographical parasite distribution. The role...
• Select The role of phenotype in gene discovery in the whole genome sequencing era

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  The role of phenotype in gene discovery in the whole genome sequencing era

  Author:Laura AlmasyFrom:Human Genetics (Vol. 131, Issue 10) Peer-Reviewed

  Oct. 20126,923 words Article 1690LAs whole genome sequence becomes a routine component of gene discovery studies in humans, we will have an exhaustive catalog of genetic variation and the challenge becomes understanding the phenotypic consequences of...
• Select Next-generation sequencing-based testing for cancer mutational landscape diversity: clinical implications?

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  Next-generation sequencing-based testing for cancer mutational landscape diversity: clinical implications?

  Authors:Christos Katsios, Costas Papaloukas, Margaret Tzaphlidou, and Dimitrios H RoukosFrom:Expert Review of Molecular Diagnostics (Vol. 12, Issue 7) Peer-Reviewed

  Sept. 20122,398 words Report 1670LAuthor(s): Christos Katsios 1 , Costas Papaloukas 2 , Margaret Tzaphlidou 3 , Dimitrios H Roukos 4 Keywords : cancer genome; heterogeneity; mutations; NGS-WES; personalized diagnostics Although tumor cell...
• Select Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia

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  Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia

  Authors:D. Schotte, F. Akbari Moqadam, E.A.M. Lange-Turenhout, C. Chen, W.F.J. van IJcken, R. Pieters, et al.From:Leukemia (Vol. 25, Issue 9) Peer-Reviewed

  Sept. 20116,062 words Report 1690LMicroRNAs (miRNAs) relevant to acute lymphoblastic leukemia (ALL) in children are hypothesized to be largely unknown as most miRNAs have been identified in non-leukemic tissues. In order to discover these miRNAs, we...
• Select The gene of Bloom's syndrome: an autosomal recessive disorder with male dominance

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  The gene of Bloom's syndrome: an autosomal recessive disorder with male dominance

  Authors:Deniz Aslan and Fatih Suheyl EzguFrom:Genetic Testing and Molecular Biomarkers (Vol. 13, Issue 4) Peer-Reviewed

  Aug. 2009854 words Article Dear Editor: WE READ WITH GREAT INTEREST the recent article by Amor-Gueret et al. (2008) ("Three new BLM gene mutations associated with Bloom syndrome"). They reported on their development of a method for screening...
• Select High, clustered, nucleotide diversity in the genome of Anopheles gambiae revealed through pooled-template sequencing: implications for high-throughput genotyping protocols

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  High, clustered, nucleotide diversity in the genome of Anopheles gambiae revealed through pooled-template sequencing: implications for high-throughput genotyping protocols

  Authors:Craig S. Wilding, David Weetman, Keith Steen, and Martin J. DonnellyFrom:BMC Genomics (Vol. 10) Peer-Reviewed

  July 16, 20096,808 words Report Authors: Craig S Wilding (corresponding author) (equal contributor) [1]; David Weetman (equal contributor) [1]; Keith Steen [1]; Martin J Donnelly [1] Background Mapping of loci controlling traits of interest in...
• Select Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey

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  Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey

  Authors:Hindrik HD. Kerstens, Richard PMA. Crooijmans, Albertine Veenendaal, Bert W. Dibbits, Thomas FC. Chin-A-Woeng, Johan T. den Dunnen, et al.From:BMC Genomics (Vol. 10) Peer-Reviewed

  Oct. 16, 20096,731 words Report Authors: Hindrik HD Kerstens [1]; Richard PMA Crooijmans [1]; Albertine Veenendaal [1]; Bert W Dibbits [1]; Thomas FC Chin-A-Woeng [2]; Johan T den Dunnen [3]; Martien AM Groenen (corresponding author) [1] Background...
• Select CNV-seq, a new method to detect copy number variation using high-throughput sequencing

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  CNV-seq, a new method to detect copy number variation using high-throughput sequencing

  Authors:Chao Xie and Martti T. TammiFrom:BMC Bioinformatics (Vol. 10) Peer-Reviewed

  Mar. 6, 20095,046 words Report Authors: Chao Xie [1]; Martti T Tammi (corresponding author) [1,2,3] Background DNA copy number variation (CNV) has long been known as a source of genetic variation, but its importance has only been recognized...
• Select Zooplankton diversity analysis through single-gene sequencing of a community sample

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  Zooplankton diversity analysis through single-gene sequencing of a community sample

  Authors:Ryuji J. Machida, Yasuyuki Hashiguchi, Mutsumi Nishida, and Shuhei NishidaFrom:BMC Genomics (Vol. 10) Peer-Reviewed

  Sept. 17, 20093,138 words Report Authors: Ryuji J Machida (corresponding author) [1]; Yasuyuki Hashiguchi [2]; Mutsumi Nishida [1]; Shuhei Nishida [1] Background The fauna of the world's oceans is dominated in terms of abundance and biomass by...
• Select Maternal genotypes as predictors of offspring mental health: the next frontier of genomic medicine?

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  Maternal genotypes as predictors of offspring mental health: the next frontier of genomic medicine?

  Authors:Jan Haavik, Anne Halmoy, Tor-Arne Hegvik, and Stefan JohanssonFrom:Future Neurology (Vol. 6, Issue 6) Peer-Reviewed

  Nov. 20119,090 words Report 1600LAuthor(s): Jan Haavik [[dagger]] 5 , Anne Halmøy 1 2 3 , Tor-Arne Hegvik 1 3 , Stefan Johansson 1 3 4 Keywords * ADHD; attention deficit-hyperactivity disorder; embryo; gene-environment interaction; genome;...