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    Academic Journals

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• Genetics and biochemistry of dehalogenating enzymes

  Authors:Dick B. Janssen, Frens Pries, and Jan R. van der PloegFrom:Annual Review of Microbiology (Vol. 48) Peer-Reviewed

  Annual 19947,923 words Article Microorganisms capable of metabolizing halogenated compounds rely on the action of various types of dehalogenating enzymes such as hydrolytic dehalogenases, glutathione trnasferases, monooxygenases and hydratases. New...

• Interactive effects of discharge reduction and fine sediments on stream biofilm metabolism

  Authors:Ana Victoria Perez-Calpe, Aitor Larranaga, Daniel von Schiller, and Arturo ElosegiFrom:PLoS ONE (Vol. 16, Issue 2) Peer-Reviewed

  Feb. 11, 20216,022 words Report 1400LDischarge reduction, as caused by water diversion for hydropower, and fine sediments deposition, are prevalent stressors that may affect multiple ecosystem functions in streams. Periphytic biofilms play a key role in...

• Integrating Kinetic Model of E. coli with Genome Scale Metabolic Fluxes Overcomes Its Open System Problem and Reveals Bistability in Central Metabolism

  Authors:Ahmad A. Mannan, Yoshihiro Toya, Kazuyuki Shimizu, Johnjoe McFadden, Andrzej M. Kierzek, and Andrea RoccoFrom:PLoS ONE (Vol. 10, Issue 10) Peer-Reviewed

  Oct. 15, 201519,400 words Report 1530LAn understanding of the dynamics of the metabolic profile of a bacterial cell is sought from a dynamical systems analysis of kinetic models. This modelling formalism relies on a deterministic mathematical description of...

• Redox dependent metabolic shift in Clostridium autoethanogenum by extracellular electron supply

  Authors:Frauke Kracke, Bernardino Virdis, Paul V. Bernhardt, Korneel Rabaey, and Jens O. KromerFrom:Biotechnology for Biofuels (Vol. 9, Issue 1) Peer-Reviewed

  Nov. 16, 20167,031 words Report 1520LBackground Microbial electrosynthesis is a novel approach that aims at shifting the cellular metabolism towards electron-dense target products by extracellular electron supply. Many organisms including several...

• Pulsed addition of HMF and furfural to batch-grown xylose-utilizing Saccharomyces cerevisiaeresults in different physiological responses in glucose and xylose consumption phase

  Authors:Magnus Ask, Maurizio Bettiga, Varuni Raju Duraiswamy, and Lisbeth OlssonFrom:Biotechnology for Biofuels (Vol. 6, Issue 1) Peer-Reviewed

  Dec. 16, 201310,526 words Report 1540LBackground Pretreatment of lignocellulosic biomass generates a number of undesired degradation products that can inhibit microbial metabolism. Two of these compounds, the furan aldehydes 5-hydroxymethylfurfural (HMF)...

• In situ determination of subsurface microbial enzyme kinetics

  Authors:J.D. Istok, J.A. Field, and M.H. SchrothFrom:Ground Water (Vol. 39, Issue 3) Peer-Reviewed

  May 20015,966 words Article The single-well, push-pull test has been used in previous field studies to measure in situ zero- and first-order rates for aerobic and anaerobic microbial respiration in the saturated zone. In this paper we demonstrate...

• Capturing global metabolism: metabolite arrays sample the metabolic state of bacteria and complex microbial communities while aiding enzyme discovery.

  Authors:Don Cowan and Marla TuffinFrom:Nature Biotechnology (Vol. 27, Issue 12) Peer-Reviewed

  Dec. 1, 20091,046 words Report 1520LThe rapid increase in available genomic and metagenomic sequence data is deepening the chasm between our understanding of what cells encode and of how they function (1,2). In a recent paper in Science, Beloqui et al. (3)...

• Growth and metabolic profiling of the novel thermophilic bacterium Thermoanaerobacter sp. strain YS13

  Authors:Tingting Peng, Siyi Pan, Lew P. Christopher, Richard Sparling, and David B. LevinFrom:Canadian Journal of Microbiology (Vol. 62, Issue 9) Peer-Reviewed

  Sept. 20165,762 words Report 1580LA strictly anaerobic, thermophilic bacterium, designated strain YS13, was isolated from a geothermal hot spring. Phylogenetic analysis using the 16S rRNA genes and cpn60 UT genes suggested strain YS13 as a species of...

• Flexible nitrogen utilisation by the metabolic generalist pathogen Mycobacterium tuberculosis

  Authors:Aleksandra Agapova, Agnese Serafini, Michael Petridis, Debbie M Hunt, Acely Garza-Garcia, Charles D Sohaskey, et al.From:eLife (Vol. 8) Peer-Reviewed

  Jan. 31, 201911,787 words Report 1670LBacterial metabolism is fundamental to survival and pathogenesis. We explore how Mycobacterium tuberculosis utilises amino acids as nitrogen sources, using a combination of bacterial physiology and stable isotope...

• Influence of L-lactate and low glucose concentrations on the metabolism and the toxin formation of Clostridioides difficile.

  Authors:Julia Danielle Hofmann, Rebekka Biedendieck, Annika-Marisa Michel, Dietmar Schomburg, Dieter Jahn, and Meina Neumann-SchaalFrom:PLoS ONE (Vol. 16, Issue 1) Peer-Reviewed

  Jan. 7, 20218,524 words Report 1490LThe virulence of Clostridioides difficile (formerly Clostridium difficile) is mainly caused by its two toxins A and B. Their formation is significantly regulated by metabolic processes. Here we investigated the influence...

• ZnO and TiO.sub.2 nanoparticles alter the ability of Bacillus subtilis to fight against a stress

  Authors:Elise Eymard-Vernain, Sylvie Luche, Thierry Rabilloud, and Cecile LelongFrom:PLoS ONE (Vol. 15, Issue 10) Peer-Reviewed

  Oct. 12, 20206,786 words Report 1490LDue to the physicochemical properties of nanoparticles, the use of nanomaterials increases over time in industrial and medical processes. We herein report the negative impact of nanoparticles, using solid growth...

• Agomelatine Softens Depressive-Like Behavior through the Regulation of Autophagy and Apoptosis.

  Authors:Fengpei Chen, Shijia Chen, Jie Liu, Nashwa Amin, Weidong Jin, and Marong FangFrom:BioMed Research International (Vol. 2021) Peer-Reviewed

  Mar. 18, 20216,482 words Report 1310LDepression is a common and disabling mental disorder with high recurrence rate. Searching for more effective treatments for depression is a long-standing primary objective in neuroscience. Agomelatine (AGO) was reported...

• Predicting the accumulation of storage compounds by Rhodococcus jostii RHA1 in the feast-famine growth cycles using genome-scale flux balance analysis

  Authors:Mohammad Tajparast and Dominic FrigonFrom:PLoS ONE (Vol. 13, Issue 3) Peer-Reviewed

  Mar. 1, 20187,266 words Report 1520LAuthor(s): Mohammad Tajparast, Dominic Frigon * Introduction Biological wastewater resource recovery systems are often highly dynamic with regard to availability of external electron donors [1]. Thus, the biomass...

• Vitamin B.sub.12 metabolism in Mycobacterium tuberculosis

  Authors:Krishnamoorthy Gopinath, Atica Moosa, Valerie Mizrahi, and Digby F WarnerFrom:Future Microbiology (Vol. 8, Issue 11)

  Nov. 20138,690 words Report 1600LAuthor(s): Krishnamoorthy Gopinath 1 , Atica Moosa 1 , Valerie Mizrahi 1 , Digby F Warner [*] 2 Keywords * B12 riboswitch; BacA; cobalt; corrinoid; methionine synthase; methylmalonyl-CoA mutase; ribonucleotide...

• The Synthesis of L-Alanyl and [beta]-Alanyl Derivatives of 2-Aminoacridone and Their Application in the Detection of Clinically-Important Microorganisms

  Authors:Marie Cellier, Arthur L. James, Sylvain Orenga, John D. Perry, Graeme Turnbull, and Stephen P. StanforthFrom:PLoS ONE (Vol. 11, Issue 7) Peer-Reviewed

  July 8, 20162,622 words Report 1650LIn clinical microbiology the speed with which pathogenic microorganisms may be detected has a direct impact on patient health. One important strategy used in the laboratory is the growth of cultures in the presence of...

• Intestinal Microbiota and Microbial Metabolites Are Changed in a Pig Model Fed a High-Fat/Low-Fiber or a Low-Fat/High-Fiber Diet

  Authors:Sonja N. Heinritz, Eva Weiss, Meike Eklund, Tobias Aumiller, Sandrine Louis, Andreas Rings, et al.From:PLoS ONE (Vol. 11, Issue 4) Peer-Reviewed

  Apr. 21, 201610,049 words Report 1590LThe intestinal microbiota and its metabolites appear to be an important factor for gastrointestinal function and health. However, research is still needed to further elaborate potential relationships between nutrition,...

• Microbial consortia at steady supply

  Authors:Thibaud Taillefumier, Anna Posfai, Yigal Meir, and Ned S WingreenFrom:eLife (Vol. 6) Peer-Reviewed

  May 5, 201718,730 words Report 1600LMetagenomics has revealed hundreds of species in almost all microbiota. In a few well-studied cases, microbial communities have been observed to coordinate their metabolic fluxes. In principle, microbes can divide tasks...

• In vivo 13C-MRI using SAMBADENA

  Authors:Andreas B. Schmidt, Stephan Berner, Moritz Braig, Mirko Zimmermann, Jurgen Hennig, Dominik von Elverfeldt, et al.From:PLoS ONE (Vol. 13, Issue 7) Peer-Reviewed

  July 12, 20188,252 words Report 1370LMagnetic Resonance Imaging (MRI) is a powerful imaging tool but suffers from a low sensitivity that severely limits its use for detecting metabolism in vivo. Hyperpolarization (HP) methods have demonstrated MRI signal...

• Proteome analysis of xylose metabolism in Rhodotorula toruloides during lipid production

  Authors:Ievgeniia A. Tiukova, Jule Brandenburg, Johanna Blomqvist, Sabine Sampels, Nils Mikkelsen, Morten Skaugen, et al.From:Biotechnology for Biofuels (Vol. 12, Issue 1) Peer-Reviewed

  June 4, 20199,759 words Report 1550LBackground Rhodotorula toruloides is a promising platform organism for production of lipids from lignocellulosic substrates. Little is known about the metabolic aspects of lipid production from the lignocellolosic...

• High-throughput transcriptome sequencing and comparative analysis of Escherichia coli and Schizosaccharomyces pombe in respiratory and fermentative growth.

  Authors:Joivier Vichi, Emmanuel Salazar, Verónica Jiménez Jacinto, Leticia Olvera Rodriguez, Ricardo Grande, Edgar Dantán-González, et al.From:PLoS ONE (Vol. 16, Issue 3) Peer-Reviewed

  Mar. 17, 202110,313 words Report 1630LIn spite of increased complexity in eukaryotes compared to prokaryotes, several basic metabolic and regulatory processes are conserved. Here we explored analogies in the eubacteria Escherichia coli and the unicellular...