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• Select Phylogeny and a structural model of plant MHX transporters

  1

  Phylogeny and a structural model of plant MHX transporters

  Authors:Rachel Gaash, Meirav Elazar, Keren Mizrahi, Meital Avramov-Mor, Irina Berezin, and Orit ShaulFrom:BMC Plant Biology (Vol. 13, Issue 1) Peer-Reviewed

  May 2, 201314,672 words Report 1420LBackground The Arabidopsis thaliana MHX gene (AtMHX) encodes a Mg.sup.2+/H.sup.+ exchanger. Among non-plant proteins, AtMHX showed the highest similarity to mammalian Na.sup.+/Ca.sup.2+ exchanger (NCX) transporters,...
• Select Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae)

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  Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae)

  Authors:Matthew Parks, Richard Cronn, and Aaron ListonFrom:BMC Evolutionary Biology (Vol. 12, Issue 1) Peer-Reviewed

  June 25, 201211,625 words Report 1720LBackground Through next-generation sequencing, the amount of sequence data potentially available for phylogenetic analyses has increased exponentially in recent years. Simultaneously, the risk of incorporating...
• Select Molecular circumscription and major evolutionary lineages of the fern genus Dryopteris (Dryopteridaceae)

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  Molecular circumscription and major evolutionary lineages of the fern genus Dryopteris (Dryopteridaceae)

  Authors:Li-Bing Zhang, Liang Zhang, Shi-Yong Dong, Emily B Sessa, Xin-Fen Gao, and Atsushi EbiharaFrom:BMC Evolutionary Biology (Vol. 12, Issue 1) Peer-Reviewed

  Sept. 13, 201210,565 words Report 1150LBackground The fern genus Dryopteris (Dryopteridaceae) is among the most common and species rich fern genera in temperate forests in the northern hemisphere containing 225-300 species worldwide. The circumscription...
• Select Serpins in rice: protein sequence analysis, phylogeny and gene expression during development

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  Serpins in rice: protein sequence analysis, phylogeny and gene expression during development

  Authors:Sheila E Francis, Renan A Ersoy, Joon-Woo Ahn, Brian J Atwell, and Thomas H RobertsFrom:BMC Genomics (Vol. 13, Issue 1) Peer-Reviewed

  Sept. 4, 201210,507 words Report 1480LAuthor(s): Sheila E Francis1 , Renan A Ersoy1 , Joon-Woo Ahn1,4 , Brian J Atwell2 and Thomas H Roberts1,3 Background Serpins constitute one of more than 80 families of protease inhibitors in nature [1] but are the...
• Select Transcriptome characterisation of Pinus tabuliformis and evolution of genes in the Pinusphylogeny

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  Transcriptome characterisation of Pinus tabuliformis and evolution of genes in the Pinusphylogeny

  Authors:Shi-Hui Niu, Zhe-Xin Li, Hu-Wei Yuan, Xiao-Yang Chen, Yue Li, and Wei LiFrom:BMC Genomics (Vol. 14, Issue 1) Peer-Reviewed

  Apr. 18, 20136,114 words Report 1460LAuthor(s): Shi-Hui Niu1 , Zhe-Xin Li1 , Hu-Wei Yuan1 , Xiao-Yang Chen1,2 , Yue Li1 and Wei Li1 Background Conifers are widely distributed globally as the largest and most diverse group of gymnosperms [1] that...
• Select Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses

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  Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses

  Authors:Jun-Bo Yang, Min Tang, Hong-Tao Li, Zhi-Rong Zhang, and De-Zhu LiFrom:BMC Evolutionary Biology (Vol. 13, Issue 1) Peer-Reviewed

  Apr. 18, 20137,528 words Report 1400LAuthor(s): Jun-Bo Yang1 , Min Tang2 , Hong-Tao Li1 , Zhi-Rong Zhang1 and De-Zhu Li1 Background Cymbidium orchids are the best known and most widely grown of all orchids. The genus Cymbidium of the orchid family...
• Select Amniote phylogeny and the position of turtles

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  Amniote phylogeny and the position of turtles

  Author:S Blair HedgesFrom:BMC Biology (Vol. 10, Issue 1) Peer-Reviewed

  July 27, 20121,280 words Report 1380LThe position of turtles among amniotes remains in dispute, with morphological and molecular comparisons giving different results. Morphological analyses align turtles with either lizards and their relatives, or at the...
• Select A phylogenetic framework for evolutionary study of the nightshades (Solanaceae): a dated 1000-tip tree

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  A phylogenetic framework for evolutionary study of the nightshades (Solanaceae): a dated 1000-tip tree

  Authors:Tiina Sarkinen, Lynn Bohs, Richard G Olmstead, and Sandra KnappFrom:BMC Evolutionary Biology (Vol. 13, Issue 1) Peer-Reviewed

  Sept. 30, 20139,547 words Report 1560LAuthor(s): Tiina Särkinen1,2 , Lynn Bohs3 , Richard G Olmstead4 and Sandra Knapp1 Background Divergence times are of major interest for studies of evolutionary biology and historical biogeography, but also to...
• Select Phylogeny, structural evolution and functional diversification of the plant PHOSPHATE1 gene family: a focus on Glycine max

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  Phylogeny, structural evolution and functional diversification of the plant PHOSPHATE1 gene family: a focus on Glycine max

  Authors:Lingli He, Man Zhao, Yan Wang, Junyi Gai, and Chaoying HeFrom:BMC Evolutionary Biology (Vol. 13, Issue 1) Peer-Reviewed

  May 24, 20138,827 words Report 1250LAuthor(s): Lingli He1,2 , Man Zhao1,2 , Yan Wang1 , Junyi Gai3 and Chaoying He1 Background PHOSPHATE1 (PHO1 ) genes play diverse roles in plant growth and development; for example, some are important for inorganic...
• Select Correction: Molecular Phylogenetics and Systematics of the Bivalve Family Ostreidae Based on rRNA Sequence-Structure Models and Multilocus Species Tree

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  Correction: Molecular Phylogenetics and Systematics of the Bivalve Family Ostreidae Based on rRNA Sequence-Structure Models and Multilocus Species Tree

  From:PLoS ONE (Vol. 9, Issue 12) Peer-Reviewed

  Dec. 15, 2014215 words Brief article, Corre... 1210LAuthor(s): The PLOS ONE Staff There is an error in the seventh sentence of the Abstract. The subfamily name is misspelled. The correct sentence is: Therefore, the subfamily Crassostreinae (including Crassostrea ),...
• Select Detection of flea-borne Rickettsia species in the Western Himalayan region of India

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  Detection of flea-borne Rickettsia species in the Western Himalayan region of India

  Authors:R. Chahota, S. Thakur, M. Sharma, and S. MittraFrom:Indian Journal of Medical Microbiology (Vol. 33, Issue 3)

  July-September 20151,630 words Article 1660LByline: R. Chahota, S. Thakur, M. Sharma, S. Mittra Human infections by various rickettsial species are frequently reported globally. We investigated a flea-borne rickettsial outbreak infecting 300 people in Western...
• Select Correction: Lake Tanganyika-A 'Melting Pot' of Ancient and Young Cichlid Lineages (Teleostei: Cichlidae)?

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  Correction: Lake Tanganyika-A 'Melting Pot' of Ancient and Young Cichlid Lineages (Teleostei: Cichlidae)?

  From:PLoS ONE (Vol. 10, Issue 7) Peer-Reviewed

  July 15, 2015670 words Correction notice 1250LAuthor(s): The PLOS ONE Staff The figures in the PDF version of this paper are of lower quality than intended. The publisher apologizes for the error. Please see the original figures provided by the authors here, as...
• Select Reconstructible phylogenetic networks: do not distinguish the indistinguishable

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  Reconstructible phylogenetic networks: do not distinguish the indistinguishable

  Authors:Fabio Pardi and Celine ScornavaccaFrom:PLoS Computational Biology (Vol. 11, Issue 4) Peer-Reviewed

  Apr. 201510,598 words Report 1520LPhylogenetic networks represent the evolution of organisms that have undergone reticulate events, such as recombination, hybrid speciation or lateral gene transfer. An important way to interpret a phylogenetic network...
• Select The balanced minimum evolution problem

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  The balanced minimum evolution problem

  Authors:Daniele Catanzaro, Martine Labbe, Raffaele Pesenti, and Juan-Jose Salazar-GonzalezFrom:INFORMS Journal on Computing (Vol. 24, Issue 2) Peer-Reviewed

  Spring 2012 Report 1520L
• Select Transfer of Villarsia cambodiana to Nymphoides (Menyanthaceae)

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  Transfer of Villarsia cambodiana to Nymphoides (Menyanthaceae)

  Authors:Nicholas P. Tippery, Donald H. Les, Jacinto C. Regalado, Jr., Leonid V. Averyanov, Vu Ngoc Long, and Peter H. RavenFrom:Systematic Botany (Vol. 34, Issue 4) Peer-Reviewed

  October-December 20093,561 words Report 1190LAuthor(s): Nicholas P. Tippery (corresponding author) [1], Donald H. Les [1], Jacinto C. Regalado, Jr. [2], Leonid V. Averyanov [3], Vu Ngoc Long [4], Peter H. Raven [2] Villarsia Vent. (Menyanthaceae), until...
• Select Phylogenetic analysis and temporal diversification of mosquitoes (Diptera: Culicidae) based on nuclear genes and morphology

  16

  Phylogenetic analysis and temporal diversification of mosquitoes (Diptera: Culicidae) based on nuclear genes and morphology

  Authors:Kyanne R. Reidenbach, Shelley Cook, Matthew A. Bertone, Ralph E. Harbach, Brian M. Wiegmann, and Nora J. BesanskyFrom:BMC Evolutionary Biology (Vol. 9) Peer-Reviewed

  Dec. 22, 20096,327 words Report Authors: Kyanne R Reidenbach [1]; Shelley Cook [2]; Matthew A Bertone [3]; Ralph E Harbach [2]; Brian M Wiegmann [3]; Nora J Besansky (corresponding author) [1] Background Mosquitoes (Diptera: Culicidae) are a...
• Select Validation of New Combinations of Three Genera in the Tribe Areae

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  Validation of New Combinations of Three Genera in the Tribe Areae

  Authors:Tetsuo Ohi-Toma, Sugong Wu, Shrirang R. Yadav, Hiroko Murata, and Jin MurataFrom:Systematic Botany (Vol. 36, Issue 1) Peer-Reviewed

  January-March 2011714 words Report 1090LAuthor(s): Tetsuo Ohi-Toma [1], Sugong Wu [2], Shrirang R. Yadav [3], Hiroko Murata [4], Jin Murata (corresponding author) [1] Ohi-Toma et al. (2010) proposed a revision of the Areae, wherein Typhonium s. l. is...
• Select Phylogeny and Biogeography of Tribe Hibisceae (Malvaceae) on Madagascar

  18

  Phylogeny and Biogeography of Tribe Hibisceae (Malvaceae) on Madagascar

  Authors:Margaret M Koopman and David A BaumFrom:Systematic Botany (Vol. 33, Issue 2) Peer-Reviewed

  April-June 20089,197 words Report Author(s): Margaret M Koopman, David A Baum (corresponding author) Madagascar is celebrated for its diverse and highly endemic flora. The diversification of Hibisceae (Malvaceae; Malvoideae) on Madagascar provides an...
• Select 'Araphid' diatom classification and the 'absolute standard'

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  'Araphid' diatom classification and the 'absolute standard'

  Author:David M. WilliamsFrom:Acta Botanica Croatica (Vol. 68, Issue 2) Peer-Reviewed

  Oct. 20093,408 words Report 'Araphid' diatom classification is discussed from the point of view of an 'absolute standard' for taxonomic rank. The 'absolute standard' is the phylogenetic tree, its nodes, the included monophyletic groups and...
• Select Blackburnia riparia, new species (Coleoptera: Carabidae, Platynini): a novel element in the Hawaiian riparian insect fauna

  20

  Blackburnia riparia, new species (Coleoptera: Carabidae, Platynini): a novel element in the Hawaiian riparian insect fauna

  Authors:James K. Liebherr and Andrew E.Z. ShortFrom:Journal of the New York Entomological Society (Vol. 114, Issue 1-2) Peer-Reviewed

  January-April 20066,177 words Report 1390LAbstract.--Blackburnia riparia, new species is described from the summit of Mt. Waialeale, Kauai, Hawaii, incorporated into a phylogenetic analysis of Blackburnia Sharp, and thereby placed as the adelphotaxon to two...